RnoEX6011863 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251006837-251008054:+
Coord C1 exon
chr2:251006837-251006896
Coord A exon
chr2:251007014-251007085
Coord C2 exon
chr2:251007938-251008054
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTACCTTGTATTTCCTGAAGGAC
3' ss Score
7.38
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ACAGGACCCCGTCCACCCTGCTTGTTGAAGGATCTCAGTGACAGTGACAGTGAGAACAGA
Seq A exon
GACCTTAAGAAGAAAGTACTTGAAAAGGAGACCTATATCCAAGAACTTTCATGTCTGTTTCATAATGAAAAG
Seq C2 exon
GAAAGTGCTTTGAAAGCAAACCGGTTTTCTCAGTCTGTCAAGGTAGTACACGATCGCCTACAGCTCCAAATTCAGAAGAGGGAGGTGGAGAATGAAAGGTTAAAAGAACACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF104734=CENP-F_leu_zip=PU(25.0=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACCCTGCTTGTTGAAGG
R:
GTTCTTTTAACCTTTCATTCTCCACC
Band lengths:
159-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]