GgaEX0010116 @ galGal3
Exon Skipping
Gene
ENSGALG00000007090 | CPN1
Description
NA
Coordinates
chr6:23453259-23455602:+
Coord C1 exon
chr6:23453259-23453358
Coord A exon
chr6:23454153-23454271
Coord C2 exon
chr6:23455428-23455602
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTTCTCACCTTGCGTTCCAGGTG
3' ss Score
10.41
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATTCACCAAGGCATCAAAGGGATGGTTACAGACAAGAACAACAATGGCATTGCAGGAGCAGTGATTTCTGTCCAGGGAATCAGTCACGACGTCACCTCTG
Seq A exon
GTGAGATGGGAGATTATTTCCGGCTGCTGCTGCCTGGCACTTACACCGTCACAGCCTCAGCAGAGGGCTACCAGCCTCAAACAGTGACAGCTACCGTGGGCCCGGCTGCACCTTCACTG
Seq C2 exon
GTGCATTTCCAGCTCAAACAAGACATGGTGAAGAAGGCCCCAGAGCGGAAAGCCTCAGGCACACGCACGAACAACAAAACCCTTCAGAAGAAGGTAGTGCCCAGATCTGTGCGCCGGGGGACCCAGAGATGAGGATGACGCATTTGTCTGAGAGCAGAGGGAAGCCCTTGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007090-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.767
Domain overlap (PFAM):
C1:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
A:
PF136201=CarboxypepD_reg=FE(51.3=100)
C2:
PF136201=CarboxypepD_reg=PD(6.6=11.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCAAGGCATCAAAGGGA
R:
TGCTCTCAGACAAATGCGTCA
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]