RnoEX0024107 @ rn6
Exon Skipping
Gene
ENSRNOG00000013439 | Cpn1
Description
carboxypeptidase N subunit 1 [Source:RGD Symbol;Acc:70931]
Coordinates
chr1:263733519-263742223:-
Coord C1 exon
chr1:263742124-263742223
Coord A exon
chr1:263738231-263738349
Coord C2 exon
chr1:263733519-263734214
Length
119 bp
Sequences
Splice sites
3' ss Seq
TACATCCTTCTGATGTTTAGGTG
3' ss Score
6.16
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTTCACCAGGGCATCAAGGGAATGGTGCTTGACGAGAACTATAACAACCTCACAGGGGCTGTCATTTCCGTCACCGGCATCAACCACGATGTCACTTCAG
Seq A exon
GTGAACACGGGGATTATTTCCGGCTGCTGCTTCCAGGTACTTACTCAGTCACTGCCAAGGCATCAGGGTATGAGCCCAAAACAGTGACTGTGACCGTGGGGCCTGCGGGACCAACACTG
Seq C2 exon
GTTGACTTCCAGCTCAAGCGAAGCACGACTCAGGTGCACCCTGTGCAGAAAGCTCCTGGCCGAGGACAGGGAAGCAGGGCAAAGCAGCCCCGGACATCCAGAAAGAAAGACCAGGCAGCAAAGCGGCACAGGGGCCCTGCATGAAGCCCAGCACCCAGGGCCACACACAGCGAGGCTATCCCTGCTCTCAAACCCCCATGGCCACACTTCTCTTTTCTTATCTGGGACATATGTAGACGCAGGCACGTACCGAACAGTTCTGAGTGTTTCTGTCTGTCCCAGGATCAAGCCTTCCTTGGGCCAGCATTAAAGGAGTCCGAACCTTCCAGAAACTGGTGCATATATACATGTCTGCTCTGCAACAGGGTTCTGGAGACCTTTCTGGGAGTCTGGTTCGGGTCACTGCATACTGAGACAGTTCAGGCTGGTTGTCTGTCTGTCTGAGAGTCTGGCCTGAAGCTGGTGACAACATGGTGCTGCAAGAAGTTGTCAAAATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013439-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.225 C2=1.000
Domain overlap (PFAM):
C1:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
A:
PF136201=CarboxypepD_reg=FE(51.3=100)
C2:
PF136201=CarboxypepD_reg=PD(6.6=10.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGGGGCTGTCATTTCC
R:
GGGGGTTTGAGAGCAGGGATA
Band lengths:
249-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]