HsaEX6089961 @ hg19
Exon Skipping
Gene
ENSG00000120054 | CPN1
Description
carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:2312]
Coordinates
chr10:101801950-101814203:-
Coord C1 exon
chr10:101814104-101814203
Coord A exon
chr10:101808515-101808633
Coord C2 exon
chr10:101801950-101802330
Length
119 bp
Sequences
Splice sites
3' ss Seq
TATATCTTTGTGACTTTCAGGTG
3' ss Score
10.07
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTTCACCAGGGCATCAAGGGAATGGTGCTTGATGAGAATTACAATAATCTCGCCAATGCTGTCATTTCTGTCAGTGGGATTAACCATGATGTCACTTCAG
Seq A exon
GTGACCATGGTGATTACTTCCGGCTGCTGCTTCCAGGTATCTACACTGTTAGTGCCACAGCACCTGGGTATGACCCAGAGACAGTAACTGTGACCGTGGGTCCTGCGGAACCAACGTTG
Seq C2 exon
GTTAACTTCCACCTCAAAAGAAGCATCCCTCAAGTAAGCCCTGTGAGGAGAGCTCCCAGCAGAAGGCACGGAGTCAGAGCCAAAGTGCAGCCCCAAGCCAGAAAGAAAGAAATGGAGATGAGGCAGCTGCAGAGAGGCCCTGCCTGAAACCCACAGTGCCAGGCAACCCTTCAGAAAGGCTTTGCTCCTGCTCTCAGATCAGATCAAGCATTCTTTCTATTTTATTATCTGGGACATATTTAAATACAAACATATTCAGAACAATTCAGAATGGTCTCCATCTGTTCCAGGGGTAAGCCATCTCTAGGTCATCATGAAAAAAATTAGGATCTATTGAAAGGTGATGTGGTGGCCGGGTGTGGTGGCTCACATCTGTAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120054-'8-11,'8-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.204 C2=0.792
Domain overlap (PFAM):
C1:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
A:
PF136201=CarboxypepD_reg=FE(51.3=100)
C2:
PF136201=CarboxypepD_reg=PD(6.6=10.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCAATGCTGTCATTTCTGT
R:
GAGCAGGAGCAAAGCCTTTCT
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)