MmuEX0012546 @ mm10
Exon Skipping
Gene
ENSMUSG00000025196 | Cpn1
Description
carboxypeptidase N, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2135874]
Coordinates
chr19:43956307-43963830:-
Coord C1 exon
chr19:43963731-43963830
Coord A exon
chr19:43959986-43960104
Coord C2 exon
chr19:43956307-43956636
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCCGTCCTTCTGGTGTTTAGGTG
3' ss Score
8.56
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG
Seq A exon
GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG
Seq C2 exon
GTTGACTTCCAACTCAAGCGAAGCTCATCTCAGGTGTACCCTGTGCAGAGAGCTCCCGGCCGAGGGCAGGGAGGCAGGGCAAAGCAGCCCCGGACATCCAGAAAGAAAGACCCAGCAACGAAACGGCATAGGGGTCCTGCATGAAGCCAGCACCCAGGACCACACACAGCGAGGCCATCCCTGCTCTCAAACCCCTTGATCACGCTTCTCTTTTATTATCTGGGACAGATTTAGACACAGACACATACAGAACACCTCCCAGTGTCTCTGTCTGCCCCGGGATCCAGCCTTCCTTAGGCCAGCATTAAAGGAGTCCGAATCTTCTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025196_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.204 C2=0.851
Domain overlap (PFAM):
C1:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
A:
PF136201=CarboxypepD_reg=FE(51.3=100)
C2:
PF136201=CarboxypepD_reg=PD(6.6=10.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGGGCATCAAGGGAATG
R:
CTTCATGCAGGACCCCTATGC
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types