GgaEX0012263 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrE22C19W28_E50C23:844669-846691:-
Coord C1 exon
chrE22C19W28_E50C23:846586-846691
Coord A exon
chrE22C19W28_E50C23:845628-845789
Coord C2 exon
chrE22C19W28_E50C23:844669-844782
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTCATGCTCTGTTTCTCCAGGAA
3' ss Score
10.22
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
CTGTAAGTGTGAGGCTCCCACCCATCCCACCAACGAAACGCTGCACTTCTGGCAGAGCAATGAGATCAACCCTGCAGCCATCGCCTGGGAAAACCTCACCGTATCT
Seq A exon
GAATGTCGACATTTGCATGGAGAATTTCATGGACCTGCCTGTGGACACGATGGCCCCTACACACCCAATGTCCTCTTCTGGTCCTGCATCCTCTTCTTCTCCACATTTGTCCTCTCGAGCTCATTGAAGATGTTTAAAACCAGCCGCTACTTCCCAACCAGA
Seq C2 exon
GTCCGGTCTACGATAAGTGACTTTGCTGTTTTCCTCACCATCGTCATCATGGTGGTCATTGACTTCCTCATTGGGATCCCATCACCAAAGCTCCACGTCCCCCATATGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'12-12,'12-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.4=100)
A:
PF0095516=HCO3_cotransp=FE(14.2=100),PF041238=DUF373=PU(22.2=66.7)
C2:
PF0095516=HCO3_cotransp=FE(9.9=100),PF041238=DUF373=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAAGTGTGAGGCTCCCAC
R:
TGAACATATGGGGGACGTGGA
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]