RnoEX0082881 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142446825-142450510:+
Coord C1 exon
chr7:142446825-142446930
Coord A exon
chr7:142447630-142447791
Coord C2 exon
chr7:142450397-142450510
Length
162 bp
Sequences
Splice sites
3' ss Seq
CAGAGTGCTTGTTGCTCCAGGAA
3' ss Score
5.51
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
CTGCAGGTGTGCGCTCCCCGAGAATCCCAACAACCACACCTTACAGTACTGGAAGGAGCACAGCATCCCGACTGCAGACGTGAACTGGGCAAACCTGACTGTCAGC
Seq A exon
GAATGCCAGGAGATGCACGGGGAGTTCATAGGATCGGCCTGTGGTCACCATGGGCCCTACACGCCTGACGTGCTCTTCTGGTCCTGTATTCTGTTCTTCGCTACCTTCATCGTCTCAAGCACCTTGAAGACGTTTAAGACGAGCCGCTACTTCCCAACGAGG
Seq C2 exon
GTTCGCTCCACGGTGAGTGACTTCGCTGTGTTCCTCACCATCTTTACTATGGTGATCCTAGACTTTCTGATTGGCGTCCCCTCGCCCAAGCTTCAGGTCCCCAGCGTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(3.3=22.2)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(15.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCGCTCCCCGAGAATC
R:
CTTGAACACGCTGGGGAC
Band lengths:
213-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]