GgaEX1053621 @ galGal4
Exon Skipping
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:858813-860857:-
Coord C1 exon
chrLGE22C19W28_E50C23:860752-860857
Coord A exon
chrLGE22C19W28_E50C23:859793-859954
Coord C2 exon
chrLGE22C19W28_E50C23:858813-858926
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTCATGCTCTGTTTCTCCAGGAA
3' ss Score
10.22
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
CTGTAAGTGTGAGGCTCCCACCCATCCCACCAACGAAACGCTGCACTTCTGGCAGAGCAATGAGATCAACCCTGCAGCCATCGCCTGGGAAAACCTCACCGTATCT
Seq A exon
GAATGTCGACATTTGCATGGAGAATTTCATGGACCTGCCTGTGGACACGATGGCCCCGACACACCCAATGTCCTCTTCTGGTCCTGCATCCTCTTCTTCTCCACATTTGTCCTCTCGAGCTCATTGAAGATGTTTAAAACCAGCCGCTACTTCCCAACCAGA
Seq C2 exon
GTCCGGTCTACGATAAGTGACTTTGCTGTTTTCCTCACCATCGTCATCATGGTGGTCATTGACTTCCTCATTGGGATCCCATCACCAAAGCTCCACGTCCCCCATATGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'18-21,'18-20,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.3=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(7.2=100)
Main Skipping Isoform:
ENSGALT00000013720fB12112
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAAGTGTGAGGCTCCCAC
R:
TGAACATATGGGGGACGTGGA
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]