BtaEX6020638 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28484161-28491491:-
Coord C1 exon
chr5:28491386-28491491
Coord A exon
chr5:28490619-28490780
Coord C2 exon
chr5:28484161-28484274
Length
162 bp
Sequences
Splice sites
3' ss Seq
CAGAATGTCTATTCCTCCAGGAG
3' ss Score
6.53
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
CTGCAGGTGCACCCTCCCAGAGAATCCGAACAATCACACTTTGCAGTACTGGAAGGACCACAACATCGTGACAACAGAAGTGCACTGGGCCAACCTGACTGTTAGT
Seq A exon
GAGTGCCAGGAGATGCACGGAGAGTTCACAGGCTCTGCCTGTGGCCACCATGGACCCTATACTCCTGATGTGCTCTTTTGGTCCTGCATTCTCTTCTTCACCACCTTCATCCTTTCCAGCACCTTGAAGACTTTCAAGACGAGTCGCTATTTCCCAACCAGA
Seq C2 exon
GTCCGCTCCATGGTGAGTGACTTTGCTGTTTTCCTCACTATCTTCACAATGGTGATTATTGATTTTTTGATTGGAGTCCCATCACCCAAGCTTCAGGTTCCCAGTGTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.8=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCACCCTCCCAGAGAATC
R:
GGAACCTGAAGCTTGGGTGAT
Band lengths:
202-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]