GgaEX0012371 @ galGal3
Exon Skipping
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2391253-2440801:+
Coord C1 exon
chr17:2391253-2391301
Coord A exon
chr17:2432929-2433016
Coord C2 exon
chr17:2440245-2440801
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCCCCCCATCAGCAA
3' ss Score
7.34
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCGGGGCTACGCTCCGGGGCTCCGGCCATGGCCACAGTGGATGCCGAG
Seq A exon
CAAACAGTGCTGAGTAAGGGAGAGACAAGGAAAGACGCCTGCATGAAGACTGAACTGCTGAAAGATATCACCAACAACAAGGAGGAAG
Seq C2 exon
GGTTCAATGCCATGGCTGCGGATGAAAGTGCTACAGAAAAGCAAGTGGGGGAACCAAAAATGGCTGTAGACGGTGAAACCAACGGTTCCTGTGAGCACGGCGAGGCTGGGAGCCACCCAAACCCAGCAAAAAACACTCAGGACAATACGAAAGTGAGCCAGCAGGACTCTAGTACTAAATTAAATAGGATAGCAGAAAATGGCATTTCTGAACGAGATGGTGAGACTGGGAAGCAAAACCATATGAAAGCTAATGACTTCACACAGACTTCTCTAACAGGGAGCAATGGATATATTCTAACCAAGCAGATGGCGCAGGAGCAACCTCTAAGGACTACCAGCACCTTTGCTTCTCTCACTGGCCATGCTGCAAAAACCCTTCCAGGAGGAGCAAGCAAAGGGAGAACTGTGGGCACCTTTTCTCAGATGCAAGCCACGATGCCAACCAAGCTCGGGGAGGGCAGTAAGGACATGGATGCTAAAAAAGCCACTGCTGCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGTGGATGCCGAG
R:
CCTGCTGGCTCACTTTCGTAT
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]