RnoEX6015765 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2057181-2123820:-
Coord C1 exon
chr3:2123776-2123820
Coord A exon
chr3:2060098-2060164
Coord C2 exon
chr3:2057181-2057737
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCTTCCCCTCCAGCAG
3' ss Score
9.74
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCGGATGCTGAG
Seq A exon
CAGGCAGTTCTGGCCAAGCAAGAGACCAAGCAGGATTGCTGCATGAAAACTGAACTGCTAAGGGAAG
Seq C2 exon
ATACACTTATGGCTGCTGATGAAGGTTCCACAGAGAAGCAAGCAGGAGAGACTCCTATGGCTGCAGATGGAGAAACCAATGGGTCTTGTGAAAAGAGTGGCGATATCAGCCATCCAAATGCACCCAAACATACTCAGGAGAACACAAGAGCTAGCCCACAGGAAGGCACCAACAGAGTATCTCGGGTGGCGGAAAATGGGGTTTCAGAAAGAGACACAGAAGTGGGGAAGCAAAACCATGTTACAGCTGACGACTTCATGCAGACGTCTGTCATTGGAAGCAATGGATATTTCTTAAATAAACCAGCCCTGCAGGGACAGCCCTTGAGGACTCCCAACACTCTAAATTCCTCGCTTCCTGGTCATGCCGCAAAAACGCTTCCTGGAGGAGCCAGTAAGTGCAGGACTCCAAGTGCACTTCCTCAGACACCAACCACAGCACCCACTGTGCCTGGGGAAGGGAGTGCAGACACAGAGGACAGAAAGCCTACAGCCTCGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242-'0-7,'0-5,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]