GgaEX0012371 @ galGal4
Exon Skipping
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:1983869-2033498:+
Coord C1 exon
chr17:1983869-1984386
Coord A exon
chr17:2025626-2025713
Coord C2 exon
chr17:2032942-2033498
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCCCCCCATCAGCAA
3' ss Score
7.34
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCGTTCCATCCTGTCCCTATCCCATCCCTATCCTGTCCCCGTCTCTCCCTGTCCCCATTCCATCTCCAGCCCACCCCGTCTCCATTTAATCCCTCTTCCGTCCTTATCCCACTCTATCCTCGTCTCGTCCCCTCCTATCCCCGCTCTGTCCCGTCCTCATTCCTCTTCCCGTTCCCGTTCCTGTCCCCGTCTCACCCCCACTCCCGTCCCTGTCCCCATCTCACCCCTGTTGTGTCCCCATCCCCGTTCCCCCCTCCCCTCTCGGTCCCGCCCTCAGCCCGCCCCCCGCCGTACAGCGCCTCCCTACGGGCGCCGCCATGACGCCGTACGGCCGAAGGGACCCGCGGGGGCCGCCATGCTGCCGCGCGCATGCGCATCGGCCTCCGGAGCGTCTCCATTGAGAAGAATGAGGGGAAAGGGGCGGAGCCAAGGCGCGAGGAGCCGCCGCGGGGGCGGGGCTACGCTCCGGGGCTCCGGCCATGGCCACAGTGGATGCCGAG
Seq A exon
CAAACAGTGCTGAGTAAGGGAGAGACAAGGAAAGACGCCTGCATGAAGACTGAACTGCTGAAAGATATCACCAACAACAAGGAGGAAG
Seq C2 exon
GGTTCAATGCCATGGCTGCGGATGAAAGTGCTACAGAAAAGCAAGTGGGGGAACCAAAAATGGCTGTAGACGGTGAAACCAACGGTTCCTGTGAGCACGGCGAGGCTGGGAGCCACCCAAACCCAGCAAAAAACACTCAGGACAATACGAAAGTGAGCCAGCAGGACTCTAGTACTAAATTAAATAGGATAGCAGAAAATGGCATTTCTGAACGAGATGGTGAGACTGGGAAGCAAAACCATATGAAAGCTAATGACTTCACACAGACTTCTCTAACAGGGAGCAATGGATATATTCTAACCAAGCAGATGGCGCAGGAGCAACCTCTAAGGACTACCAGCACCTTTGCTTCTCTCACTGGCCATGCTGCAAAAACCCTTCCAGGAGGAGCAAGCAAAGGGAGAACTGTGGGCACCTTTTCTCAGATGCAAGCCACGATGCCAACCAAGCTCGGGGAGGGCAGTAAGGACATGGATGCTAAAAAAGCCACTGCTGCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAATGAGGGGAAAGGGGC
R:
TTGGTTTCACCGTCTACAGCC
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]