GgaEX0012661 @ galGal3
Exon Skipping
Gene
ENSGALG00000008681 | NELF
Description
NA
Coordinates
chr17:2125095-2138333:+
Coord C1 exon
chr17:2125095-2125156
Coord A exon
chr17:2133924-2134403
Coord C2 exon
chr17:2138258-2138333
Length
480 bp
Sequences
Splice sites
3' ss Seq
AAGTGTGCAATTTGTTTCAGATC
3' ss Score
7.21
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGCGGCAAGGGCTTTTGGAGAATACCTTTCACAAAATCATCCTGAAGGCAGAAATGGCTCAG
Seq A exon
ATCACCTGTTAGCAGACTCCTACATCGGGCAGGAGGACTCCCCCGAGATGCAGCAGGCAGCACAGAACAAGCGCAGGCTCTCTGTCATCTCCGATGGCAAGTTTGAGAGGAGCTTCTCTGAGGAGCAGACAGAGAAGATGCCAAGCGAAGGACCGAAGCCACGAGTCTACACGATCTCTGGCGAGAGGCCGATGCTGTCAGACCACGAGAACGAAAGTATGGAACTGGTGGTGATGAAAGGGGCTGCCCAAGAGGAATGTCACCACGGCCACCCCGTGCACGGTGCTGGTGGCTCTCACGGTGTCAGCAGGCATTGCAAGGGCTGGCCTGGAAGCCGGCAGGGATCCAAGGAGTGCCCAAACTGCACCCGGCTGGCTGCTCCTTCCCATCATTCCTTTGACCTTGAGCCACATCAATCCGGCGAGACTGGATGGCACAGAAAAAGGCTGGAAAGGATGTACAGTGTCGATCGAGTGTCTG
Seq C2 exon
ATGATGTCCCCATACGAACCTGGTTCCCAAAAGAGAACCTCTTCAGTTTTCAAACTGCTACTACAACTATGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.901 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]