MmuEX0031486 @ mm10
Exon Skipping
Gene
ENSMUSG00000006476 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:25054998-25057176:+
Coord C1 exon
chr2:25054998-25055059
Coord A exon
chr2:25055636-25056136
Coord C2 exon
chr2:25057101-25057176
Length
501 bp
Sequences
Splice sites
3' ss Seq
CACCTGATGCCTTTCCCTAGACC
3' ss Score
8.28
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGCAGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACGGTGCAG
Seq A exon
ACCACCTGCTGGCTGACGCCTACTCTGGCCACGACGGGTCCCCAGAGATGCAACCTGCACCCCAGAACAAGCGCCGCCTCTCCCTCGTCTCCAATGGCCGATATGAGGGCAGCATCTCAGATGAGGCAGTCAGCGGGAAGCCGGCTATAGAGGGCCCCCAGCCCCACGTGTACACCATCTCTAGAGAGCCCGCCCTGCTACCTGGCTCTGAAGCTGAAGCCATTGAGCTAGCAGTGGTAAAAGGGAGGAGACAGCGGGAACGGCACCCTCACCACCACAGCCAGCCCCTGCGTGCCAGCCCAGGCAGCAGCCGGGAGGACATCAGCAGGCCCTGCCAAAGCTGGGCAGGAAGCCGCCAGGGCTCCAAAGAGTGCCCAGGATGTGCCCAGCTGGTCCCTGGTCCCTCTTCTCGGGCCTTTGGGCTGGAGCAGCCACCTCTACCTGAGGCTCCTGGCCGCCACAAGAAGCTGGAAAGGATGTATAGCGTTGATGGAGTGTCTG
Seq C2 exon
ATGATGTCCCCATCCGTACCTGGTTCCCCAAGGAAAACCTTTTCAGCTTCCAGACGGCAACCACAACTATGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=0.932 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types