RnoEX0061200 @ rn6
Exon Skipping
Gene
ENSRNOG00000008810 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:RGD Symbol;Acc:619819]
Coordinates
chr3:2262861-2265001:+
Coord C1 exon
chr3:2262861-2262922
Coord A exon
chr3:2263492-2263992
Coord C2 exon
chr3:2264926-2265001
Length
501 bp
Sequences
Splice sites
3' ss Seq
ACCTGCTGCCTCTCCCTTAGACC
3' ss Score
9.05
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGCAGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACGGTGCAG
Seq A exon
ACCACCTGCTGGCCGACGCCTACTCTGGCCACGAAGGGTCCCCAGAGATGCAGCCTGCACCCCACAACAAGCGCCGCCTCTCCCTCGTCTCCAATGGCCGCTATGAGGGCAGCATCTCAGATGAGGCAGTCAGCGGGAAGACGGCTACAGAGGGCCCCCAGCCCCGTGTGTACACCATCTCTAGAGAGCCAGCCCTGCTGCCTGGCTCTGAAGCCGAAGCCATTGAGCTAGCAGTGGTGAAAGGGAGGAGGCAGCGGGAGCGGCACCCTCACCACCACAGCCAGCCCCTGCGCGCCAGCCCAGGCAGCAGCCGTGAGGACATCAGCAGGCCCTGCCAAAGCTGGGCAGGAAGCCGCCAGGGCTCCAAAGAATGCCCCGGATGTGCCCAGCTGGTCCCTGGTCCCTCCCCTCGGGCCTTCGGGTTGGAACAGCCACCTCTACCTGAGGCTTCCGGCCGTCACAAGAAGCTGGAAAGGATGTATAGTGTTGATGGAGTGTCTG
Seq C2 exon
ATGACGTCCCCATCCGTACCTGGTTCCCCAAGGAAAACCCTTTCAGCTTCCAGACGGCAACCACAACTATGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008810-'2-5,'2-2,5-5
Average complexity
S
Mappability confidence:
91%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=0.940 C2=0.269
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]