GgaEX0013381 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:26122879-26125581:+
Coord C1 exon
chr1:26122879-26123835
Coord A exon
chr1:26124080-26124232
Coord C2 exon
chr1:26125481-26125581
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCATCTAACTCTTTCCGTAGGGT
3' ss Score
10.14
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
TCTCTGATGTGCGGGAGACCAACAAGAGCTTGTCTCAGCAGCTGAGTAAAATGGAAAGTAAAGCTAATAGTCTAGAAAATGAGCTTCACCAGTTTAAACAAACACTTCGAGAAAAAACACTGCTTTTAGAAATGACACAAAAAGACTTAAATCAAGCCCAGTGTCAGGCAAAAGAAAGTGATCATGCACGGCAACTTGAGAAAGATCAAGTCAGCAAATTTATGATAAAGCAGGAATCTATGCAGGAACGATTGGCCCAGCTCCAAAGTGAAAACCTTTTACTCCGTCAGCAGCTGGAAGATATGCAGAACAAGGGAATCATCAAAGAAAAGGTTGTGAATGATGTCCAGGACAAATTTAATGATATTTTCAACAAACTCAGAGCTGATACTGAAAAGCAAGTTTACCTCATGGAAGAGAGAAACAAGGAATTAAATACCAAGTGTACTGATTTAAGGGAACAAGTCTTTAAATATGAAACTGACAAGGTGGAAAGAGAG
Seq A exon
GGTATGGTCAGACAGCTACAGCAGGAGCTTGCTGATGCTCTTAAAAAGCAGTCTATGTCAGAAGCTTCCCTTGAAGTTACTACACGCTACCGCAGTGACCTTGAGGAAGACAAATTGCGCTTGCAAAAGGAATTGGACAGGGTTAAAACCAAG
Seq C2 exon
TTACAGGAATCTGAAGAACAGCGTATTCAGTCTGAGCATTGTGTTCATGACTTGAAGACTGTCCTAGATAATAAGGAAAGAGAAGTATCAGCTTCTTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'22-16,'22-15,23-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.332 A=0.020 C2=NA
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=WD(100=95.6),PF088265=DMPK_coil=WD(100=18.5),PF136151=Racemase_4=WD(100=29.8)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTCAGCAGCTGGAAGATA
R:
TGCTCAGACTGAATACGCTGT
Band lengths:
256-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]