MmuEX6006492 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118468359-118473913:-
Coord C1 exon
chr6:118472957-118473913
Coord A exon
chr6:118471859-118472011
Coord C2 exon
chr6:118468359-118468429
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGTAACAAATGTCTTACCAGGTA
3' ss Score
5.12
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TGTCTAACCTCCGAGATAACAATGAGGTTCTCTCCCAACAGCTTTCTAAAACTGAAAGGAAGTTGAATAGCCTAGAAATTGAGTTTCATCACACGAAAGATGAGCTTCGAGAGAAGACGCTGGCGTTAAAGCATGCGCAGAGAGACCTGAGCCAGACCCAGTGCCAGATGAAGGAGGTGGAGCACATGTTTCAGGACGAACAAGGCAAAGTGAGCAAGTTCATGGGGAAGCAGGAGTCCATAGAGGAGAGGCTGGCCCAGCTGCAGAGTGAGAACACGCTGCTCCGGCAGCAGCTGGACGACGCTGCCAACAAGGCCGAGAGCAAAGACAAGACCATAGTCAACATCCAAGACCAGTTCCAGGATGTGCTAACCAGGTTCCAAGCTGAGAGTCAGCGGCACAGCCTGAGGCTAGAAGACAGAAACCAGGAGTTAGTCAGTGAGTGCAGCCATCTAAGAGAAAGACTGTGTCAGTACGAGAACGAGAAAGCCGAAAGAGAG
Seq A exon
GTAGTTGTGAGGCAACTCCAGCAAGAATTGGCTGATACCCTAAAAAAGCAGTCGATGTCAGAGGCTTCGCTGGAAGTCTCCTCCCGCTACCGCAGCAATTTAGAAGAAGAGGCGCGAGACTTAAAGAAGAAATTAGGTCAGCTCAGAAGTCAG
Seq C2 exon
TTGCAGGAGGCGCGGGATCAACACAGAGAGGCTGTACACCATGCTGAGAAGATGGAAGACCACCTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'32-33,'32-30,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.422 C2=0.958
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(42.9=44.2),PF149151=CCDC144C=WD(100=95.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAAGGCCGAGAGCAAAGA
R:
TCTCAGCATGGTGTACAGCCT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: