RnoEX6014803 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150563032-150568825:-
Coord C1 exon
chr4:150567869-150568825
Coord A exon
chr4:150566740-150566892
Coord C2 exon
chr4:150563032-150563102
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGTAACAAATGTCTCATCAGGTA
3' ss Score
4.94
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TGTCTAACCTCAGGGATAACAACGAGGTCCTCTCCCAACAGCTTTCTAAAACTGAAAGAAAGTTGAATAGCCTCGAAACCGAGTTTCATCACACACAGGGTGAGCTCAGAGAGAAGACGCTCGCTTTGAAGTGTGTGCAGAGAGACCTCAGCCAGACGCAGAGCCAGATGAAGGAGGTGGAGCACATGTTTCAGGACGAGCAAGGGAAGGTGAATAAATACATGGGAAAGCAGGAGTCCATAGAGGAGAGGCTGGCTCAGCTGCAGAGTGAGAACACGCTGCTCCGGCAGCAGCTGGACGATGCCGCCAACAAGGCCGAGAGCAAAGACAGGACGATAGTGAGCATCCAAGACCAGTTCCAGGAGATGCTCAACAGAGTCCAAGCCGAGAGTCAGAAGCACAGCCTAAGGCTGGAAGACAGAAATCAGGAGTTAATCATCGAGTGCAGCCATCTGAAAGAAAGAATGTGTCAGTACGAGAATGAGAAAGCAGAAAGAGAA
Seq A exon
GTAGCTGTGAGGCAACTTCAGCAAGAACTGGCAGATACCCTAAAAAAGCAGTCCATGTCAGAGGCTTCGCTAGAGGTTTCCTCCCGTTACCGCAGCAGTCTAGAAGAAGAGGCCAGAGACTTAAAGAAGAACTTAAGTCAGCTCAGAAGTCAG
Seq C2 exon
CTGCAAGAGGCGCAGGACCAACACAGAGAGGCTGTTCAGCGCGCTGAGAAGATGCAGGACCACCTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'37-35,'37-33,38-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=0.510 C2=0.917
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=WD(100=95.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAAGGCCGAGAGCAAAGA
R:
GTGGTCCTGCATCTTCTCAGC
Band lengths:
256-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]