GgaEX0013386 @ galGal3
Exon Skipping
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:691166-693776:+
Coord C1 exon
chr17:691166-691305
Coord A exon
chr17:691671-691834
Coord C2 exon
chr17:693641-693776
Length
164 bp
Sequences
Splice sites
3' ss Seq
GAATCTCTCTTTCCTTTCAGAGA
3' ss Score
9.95
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CAAAGTTCTGGAAGAAAGGATTTGGACCGATCTTTTTCTATACTGGTAATGAAGGCAACATCTGGACTTTTGCTGAGAACTCGGACTTCATATTTGAGTTAGCAGAGCAGCAGCAAGCTCTTGTGATTTTTGCTGAGCAT
Seq A exon
AGATACTATGGGAAATCTCTTCCGTTTGGACTTGAGTCAACGCAGCTAAAGAATACTCATCTGCTCACTGTGGAACAAGCCCTTGCTGACTATGCAGTGCTAATTACTGAGCTTAAGCAGCAGTATGGAGCTGCAGGCTGCCCTGTCATTGCTTTCGGAGGCAG
Seq C2 exon
CTACGGAGGAATGCTGAGTGCCTACATGAGGATGAAATACCCAAACGTTGTGGATGGGGCATTGGCTGCCAGCGCTCCTGTGCTGTCTGTGGCTGGGCTTGGAGATCCCACTCAGTTCTTCAGAGATGTAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.7=100)
A:
PF055777=Peptidase_S28=FE(12.6=100)
C2:
PF055777=Peptidase_S28=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAAAGGATTTGGACCGA
R:
TGAAGAACTGAGTGGGATCTCCA
Band lengths:
254-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]