HsaEX6064207 @ hg19
Exon Skipping
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140007658-140008834:-
Coord C1 exon
chr9:140008695-140008834
Coord A exon
chr9:140008317-140008480
Coord C2 exon
chr9:140007658-140007739
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCAATGGCACGTTCCCCCAGCGC
3' ss Score
6.5
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACAGGTTCTGGGTCCGGGGCGAGGGGCCCATCTTCTTCTACACTGGGAACGAGGGCGACGTGTGGGCCTTCGCCAACAACTCGGCCTTCGTCGCGGAGCTGGCGGCCGAGCGGGGGGCTCTACTGGTCTTCGCGGAGCAC
Seq A exon
CGCTACTACGGGAAGTCGCTGCCGTTCGGTGCGCAGTCCACGCAGCGCGGGCACACGGAGCTGCTGACGGTGGAGCAGGCCCTGGCCGACTTCGCAGAGCTGCTCCGCGCGCTACGACGCGACCTCGGGGCCCAGGATGCCCCCGCCATCGCCTTCGGTGGAAG
Seq C2 exon
GACTTTGAGGGCCAGAGTCCCAAATGCACCCAGGGTGTGCGGGAAGCGTTCCGACAGATCAAGGACTTGTTCCTACAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-'4-16,'4-11,5-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.318 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.7=100)
A:
PF055777=Peptidase_S28=FE(12.6=100)
C2:
PF055777=Peptidase_S28=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTTCTGGGTCCGGG
R:
GGAACAAGTCCTTGATCTGTCGG
Band lengths:
213-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)