HsaEX6064207 @ hg38
Exon Skipping
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr9:137113361-137114382:-
Coord C1 exon
chr9:137114243-137114382
Coord A exon
chr9:137113865-137114028
Coord C2 exon
chr9:137113361-137113496
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCAATGGCACGTTCCCCCAGCGC
3' ss Score
6.5
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACAGGTTCTGGGTCCGGGGCGAGGGGCCCATCTTCTTCTACACTGGGAACGAGGGCGACGTGTGGGCCTTCGCCAACAACTCGGCCTTCGTCGCGGAGCTGGCGGCCGAGCGGGGGGCTCTACTGGTCTTCGCGGAGCAC
Seq A exon
CGCTACTACGGGAAGTCGCTGCCGTTCGGTGCGCAGTCCACGCAGCGCGGGCACACGGAGCTGCTGACGGTGGAGCAGGCCCTGGCCGACTTCGCAGAGCTGCTCCGCGCGCTACGACGCGACCTCGGGGCCCAGGATGCCCCCGCCATCGCCTTCGGTGGAAG
Seq C2 exon
TTATGGGGGGATGCTCAGTGCCTACCTGAGGATGAAGTATCCCCACCTGGTGGCGGGGGCGCTGGCGGCCAGCGCGCCCGTTCTAGCTGTGGCAGGCCTCGGCGACTCCAACCAGTTCTTCCGGGACGTCACGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-'3-16,'3-12,4-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.090 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(10.7=100)
A:
PF055777=Peptidase_S28=FE(12.6=100)
C2:
PF055777=Peptidase_S28=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGGCCCATCTTCTTCTA
R:
CGGAAGAACTGGTTGGAGTCG
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains