GgaEX0013958 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21882994-21888473:-
Coord C1 exon
chr9:21888345-21888473
Coord A exon
chr9:21883988-21884116
Coord C2 exon
chr9:21882994-21883122
Length
129 bp
Sequences
Splice sites
3' ss Seq
GGGGGCTCTTCTCATTGCAGCGT
3' ss Score
7.77
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CTTGTCCAGAAGGATTTTTTGGGCTTGACTGCCACCAGGTGTGCAACTGCAAGAACGCTGAGGGCTGTGACCATGTCCTGGGGACGTGCCGCTGCCTCCCAGGCTGGAGGGGAGAGACCTGCGAGCAGC
Seq A exon
CGTGTCAGGGGGACAGGTTTGGGCAGGGCTGTGCTCACACCTGCAACTGTCACAACGGAGCACTCTGCGACCACATAACGGGGACATGTGCCTGCACCCCAGGCTGGGGAGGAGCCACCTGCCAAGAAG
Seq C2 exon
CCTGTCCCCCAGGCTGGCATGGTGCTGGCTGCCTTCAGCGCTGCATTTGCCCTGGCCAGACTGCATGTGACCCCGTGACGGGCAAGTGCCAGTGTTCCAAGGGCGGAACAGGGACATCCTGTGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(65.9=65.9)
C2:
PF0005319=Laminin_EGF=PD(31.8=31.8),PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACTGCCACCAGGTGTG
R:
CAAGCTCACAGGATGTCCC
Band lengths:
235-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]