GgaEX0013959 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21882179-21884116:-
Coord C1 exon
chr9:21883988-21884116
Coord A exon
chr9:21882994-21883122
Coord C2 exon
chr9:21882179-21882307
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCTCCTCTCCTCAGCCT
3' ss Score
8.93
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
CGTGTCAGGGGGACAGGTTTGGGCAGGGCTGTGCTCACACCTGCAACTGTCACAACGGAGCACTCTGCGACCACATAACGGGGACATGTGCCTGCACCCCAGGCTGGGGAGGAGCCACCTGCCAAGAAG
Seq A exon
CCTGTCCCCCAGGCTGGCATGGTGCTGGCTGCCTTCAGCGCTGCATTTGCCCTGGCCAGACTGCATGTGACCCCGTGACGGGCAAGTGCCAGTGTTCCAAGGGCGGAACAGGGACATCCTGTGAGCTTG
Seq C2 exon
CATGTCCCCCAGGATTTTTTGGAGAGAGATGTGAAGAGCAATGTGACTGCATTCACAGCGTGTCCTGCCACCCCCAAACGGGGGCTTGTCGCTGTGCCAAGGGGTGGCGAGGCAGGCACTGTGACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'24-28,'24-27,25-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(65.9=65.9)
A:
PF0005319=Laminin_EGF=PD(31.8=31.8),PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGGGACAGGTTTGGG
R:
GTTTGTCACAGTGCCTGCCTC
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]