GgaEX1002283 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21881904-21883122:-
Coord C1 exon
chr9:21882994-21883122
Coord A exon
chr9:21882179-21882307
Coord C2 exon
chr9:21881904-21882032
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGCCTGCTTCTCCCCACAGCAT
3' ss Score
11.33
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CCTGTCCCCCAGGCTGGCATGGTGCTGGCTGCCTTCAGCGCTGCATTTGCCCTGGCCAGACTGCATGTGACCCCGTGACGGGCAAGTGCCAGTGTTCCAAGGGCGGAACAGGGACATCCTGTGAGCTTG
Seq A exon
CATGTCCCCCAGGATTTTTTGGAGAGAGATGTGAAGAGCAATGTGACTGCATTCACAGCGTGTCCTGCCACCCCCAAACGGGGGCTTGTCGCTGTGCCAAGGGGTGGCGAGGCAGGCACTGTGACAAAC
Seq C2 exon
CCTGCTTGCCTGGCCACTACGGCATGGGTTGTGCCCGGCGGTGCCACTGCCCTGCAGGCACCCCCTGCCACCACCTGACGGGTGAGTGCAGCTGTCCTCCAGGATTCACTGGCCATGGCTGCGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'25-29,'25-28,26-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(31.8=31.8),PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
PF0005319=Laminin_EGF=PD(34.8=36.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCCAGGCTGGCATG
R:
CATGGCCAGTGAATCCTGGAG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]