GgaEX1002284 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21880888-21882307:-
Coord C1 exon
chr9:21882179-21882307
Coord A exon
chr9:21881904-21882032
Coord C2 exon
chr9:21880888-21881016
Length
129 bp
Sequences
Splice sites
3' ss Seq
GATTTGGTGTCCTTCTGCAGCCT
3' ss Score
7.08
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CATGTCCCCCAGGATTTTTTGGAGAGAGATGTGAAGAGCAATGTGACTGCATTCACAGCGTGTCCTGCCACCCCCAAACGGGGGCTTGTCGCTGTGCCAAGGGGTGGCGAGGCAGGCACTGTGACAAAC
Seq A exon
CCTGCTTGCCTGGCCACTACGGCATGGGTTGTGCCCGGCGGTGCCACTGCCCTGCAGGCACCCCCTGCCACCACCTGACGGGTGAGTGCAGCTGTCCTCCAGGATTCACTGGCCATGGCTGCGAGAAAA
Seq C2 exon
CTTGTCCACCAAACACGTATGGCCAGAGTTGCAGCCAAGCCTGTCGCTGCCGTGCTGAGGAGGACTGTCACCCCATCACTGGGCGGTGCGTGTGCCGCCTGGGGTACCACGGGGCCCAGTGTGACCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'26-30,'26-29,27-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGAGAGAGATGTGAAGAGCA
R:
CACTGGGCCCCGTGGTAC
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]