MmuEX6098373 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154267190-154267787:+
Coord C1 exon
chr4:154267190-154267318
Coord A exon
chr4:154267433-154267561
Coord C2 exon
chr4:154267656-154267787
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCATTCTACACTTCCCACAGCCT
3' ss Score
7.28
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
CCTGCGTCAGTGGCATGTTTGGGGTTCACTGTGAGGAGCACTGTGCCTGCCGGAAAGGTGCCACCTGTCACCATGTCACGGGGGCCTGCCTCTGTCCCCCAGGATGGAGGGGCTCACACTGTGAACAGG
Seq A exon
CCTGTCCACGTGGCTGGTTTGGAGAGGCCTGTGCTCAGCGTTGCCACTGCCCGCCTGGTGCCTCCTGCCACCATGTCTCTGGAGAGTGCCACTGTCCACCCGGCTTCACTGGGCCTGGCTGTGAGCAGG
Seq C2 exon
CCTGCCAGCCTGGCACCTTTGGCAAGGACTGTGAGCACCCGTGCCAATGTCCTGGTGAGACCTGGGCCTGCCACCCTGCTTCAGGGGCCTGCGTATGTGCTGCTGGTTACCATGGCACCGACTGTCAGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'39-46,'39-37,43-46=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=35.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGCATGTTTGGGGTTC
R:
GACAGTCGGTGCCATGGTAAC
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types