MmuEX6098373 @ mm9
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:153641299-153642171:+
Coord C1 exon
chr4:153641299-153641427
Coord A exon
chr4:153641542-153641670
Coord C2 exon
chr4:153642043-153642171
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCATTCTACACTTCCCACAGCCT
3' ss Score
7.28
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
CCTGCGTCAGTGGCATGTTTGGGGTTCACTGTGAGGAGCACTGTGCCTGCCGGAAAGGTGCCACCTGTCACCATGTCACGGGGGCCTGCCTCTGTCCCCCAGGATGGAGGGGCTCACACTGTGAACAGG
Seq A exon
CCTGTCCACGTGGCTGGTTTGGAGAGGCCTGTGCTCAGCGTTGCCACTGCCCGCCTGGTGCCTCCTGCCACCATGTCTCTGGAGAGTGCCACTGTCCACCCGGCTTCACTGGGCCTGGCTGTGAGCAGG
Seq C2 exon
GATGCCCATCTGGGCGCTATGGGCCAGGCTGTGAACAAATTTGTAAGTGTCTCAATGGTGGGACCTGCGATCCAGCCACGGGAGCCTGCTACTGCCCTGCTGGGTTCCTTGGGGCCGACTGTAGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'30-31,'30-29,31-31=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(32.6=31.8),PF079748=EGF_2=WD(100=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGCATGTTTGGGGTTC
R:
CTACAGTCGGCCCCAAGGAA
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: