GgaEX1002284 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19797687-19803547:-
Coord C1 exon
chr9:19803419-19803547
Coord A exon
chr9:19803144-19803272
Coord C2 exon
chr9:19797687-19797815
Length
129 bp
Sequences
Splice sites
3' ss Seq
GATTTGGTGTCCTTCTGCAGCCT
3' ss Score
7.08
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CATGTCCCCCAGGATTTTTTGGAGAGAGATGTGAAGAGCAATGTGACTGCATTCACAGCGTGTCCTGCCACCCCCAAACGGGGGCTTGTCGCTGTGCCAAGGGGTGGCGAGGCAGGCACTGTGACAAAC
Seq A exon
CCTGCTTGCCTGGCCACTACGGCATGGGTTGTGCCCGGCGGTGCCACTGCCCTGCAGGCACCCCCTGCCACCACCTGACGGGTGAGTGCAGCTGTCCTCCAGGATTCACTGGCCATGGCTGCGAGAAAA
Seq C2 exon
GGTGTCCAGAAGGTACTTACGGTTCAAACTGCCAAAAATCCTGTAAATGCATGAATGGAGGCCATTGCGACCCAGTGTCGGGAACTTGTGATTGCGCGCCTGGTTTCATTGGAGCCGACTGTAGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458_MULTIEX3-5/6=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
NO
C2:
PF126612=hEGF=WD(100=29.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGAGAGAGATGTGAAGAGCA
R:
TTTTACTACAGTCGGCTCCAATGA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]