GgaEX0014139 @ galGal3
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19471339-19475667:-
Coord C1 exon
chr7:19475560-19475667
Coord A exon
chr7:19474950-19475055
Coord C2 exon
chr7:19471339-19471481
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCTGCATTATTTTAGTTC
3' ss Score
7.2
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATATTTGGCAACAGTGTGACAGATGTTGCTATTTCTAATGGAATCCTGATTGTAATGTATAGCATGGGTTTGGTCAGGCTCTATAACTTCCAGGACATCTCTGAACAG
Seq A exon
TTCATGGAGCGGCCATTTGACTTGGGAAGTGAACTCAATTGGAATGGTGAAGTGGGAGTTGTGGGAAAGTATCCATTTGGTCTTCCATGTAACATTAAAATAACAG
Seq C2 exon
ATACCCCACCTTTGCTATTTGAAGCATCTTCTCTGGAGAATGCATTTCAAATTGGAGGCTTTCCTTGGCATTATATCATCACACCTAACAAGAAAAAACATAGAGGAGTCTTCTATATTTGTTCTCTGAAAGACAATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'8-11,'8-8,9-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAACAGTGTGACAGATGT
R:
CAAAGCATTGTCTTTCAGAGAACA
Band lengths:
246-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]