MmuEX0013828 @ mm10
Exon Skipping
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71078060-71082053:+
Coord C1 exon
chr2:71078060-71078164
Coord A exon
chr2:71078474-71078579
Coord C2 exon
chr2:71081911-71082053
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTGTTTTTAGTTC
3' ss Score
9.4
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTTTTTGAGAATGTCACAGATGCTACCTTGTCACATGGAATCCTGATTGTGATGTACAGCTCGGGACTAGTCAGACTCTACAGCTTCCAAGCCATCATCGAACAG
Seq A exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGTCAGGGCGGGACTACTGGGACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATGTTAAAATCACAG
Seq C2 exon
ACTCACCACCTCCACTCTTTGAAGTTTCATCTCTGGAGAACGCATTCCAGATTGGAGGCCATCCTTGGCACTACATCATCACGCCTAATAAGAAGAAACAGAAAGGAGTTTTTCATATTTGTGCCCTAAAAGATAATTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTGAGAATGTCACAGATGCT
R:
TTAGGGCACAAATATGAAAAACTCCT
Band lengths:
234-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types