RnoEX0026373 @ rn6
Exon Skipping
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57661703-57665477:+
Coord C1 exon
chr3:57661703-57661807
Coord A exon
chr3:57662073-57662178
Coord C2 exon
chr3:57665335-57665477
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTGTTTTTAGTTC
3' ss Score
9.4
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTTTTCGAGAACGTCACAGATGCTACCTTGTCACATGGAATCCTGATTGTGATGTACAGCTCAGGACTAGTCAGGCTGTACAGCTTCCAAGCCATCATCGAGCAG
Seq A exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGTCAGGGCGGGACTACTGGGACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATGTTAAAATCACAG
Seq C2 exon
ACTCACCACCTCCACTCTTTGAAGTTTCATCCCTGGAGAATGCATTTCAGATTGGAGGCCATCCTTGGCACTACATCATCACGCCTAATAAGAAGAAACAAAAGGGAGTTTTCCATATTTGTGCCCTTAAAGATAATTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.095 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAACGTCACAGATGCTACC
R:
CAGGGAATTATCTTTAAGGGCACA
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]