RnoEX6017368 @ rn6
Exon Skipping
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57662073-57667360:+
Coord C1 exon
chr3:57662073-57662178
Coord A exon
chr3:57665335-57665477
Coord C2 exon
chr3:57667251-57667360
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGCTCATCCCTACAGACT
3' ss Score
9.37
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGTCAGGGCGGGACTACTGGGACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATGTTAAAATCACAG
Seq A exon
ACTCACCACCTCCACTCTTTGAAGTTTCATCCCTGGAGAATGCATTTCAGATTGGAGGCCATCCTTGGCACTACATCATCACGCCTAATAAGAAGAAACAAAAGGGAGTTTTCCATATTTGTGCCCTTAAAGATAATTCCCTG
Seq C2 exon
GCAAAAAATGGAATCCAGGAAATGGAATGTTGTTCACTAGAATCTGACTGGATCTATTTCCACCCTGATGCTTCTGGAAGAATAATACACGTTGGCCCAAATCAAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403-'12-10,'12-9,14-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAGAAACTTGACTTAGGGT
R:
TGACTTGATTTGGGCCAACGT
Band lengths:
211-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]