GgaEX0014136 @ galGal4
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17524698-17529831:-
Coord C1 exon
chr7:17529726-17529831
Coord A exon
chr7:17526115-17526257
Coord C2 exon
chr7:17524698-17524807
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACATTACCCCATGTTTGCAGATA
3' ss Score
7.25
5' ss Seq
TTGGTAATA
5' ss Score
4.19
Exon sequences
Seq C1 exon
TTCATGGAGCGGCCATTTGACTTGGGAAGTGAACTCAATTGGAATGGTGAAGTGGGAGTTGTGGGAAAGTATCCATTTGGTCTTCCATGTAACATTAAAATAACAG
Seq A exon
ATACCCCACCTTTGCTATTTGAAGCATCTTCTCTGGAGAATGCATTTCAAATTGGAGGCTTTCCTTGGCATTATATCATCACACCTAACAAGAAAAAACATAGAGGAGTCTTCTATATTTGTTCTCTGAAAGACAATGCTTTG
Seq C2 exon
GCAAAAAATGGCATACAAGATATGAAATGCTGTTCGCTGGAACCTGATTGGATATATTTCCATCCAGATATGTCGGGCAGAATAATCCACGTGGGACCAAATTTGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCGGCCATTTGACTTG
R:
TATCAAATTTGGTCCCACGTGGA
Band lengths:
210-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]