DreEX0025858 @ danRer10
Exon Skipping
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3534351-3537624:-
Coord C1 exon
chr9:3537519-3537624
Coord A exon
chr9:3537005-3537147
Coord C2 exon
chr9:3534351-3534460
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCAATGCTTCTCTCCACAGAGT
3' ss Score
11.02
5' ss Seq
CTGGTGCCT
5' ss Score
0.99
Exon sequences
Seq C1 exon
TTTAGAACTGAGGAGCTGATTCTGGGACAGCAGTGTGAGCTGAATAATGCAAGGGGAATCGTGGGAGATGCTCCATATGGTGTTCCGGTCAACATTTGCATTCATG
Seq A exon
AGTGTCCCCCAGTCTTGTTTGAGATGACATACTTTGAGAATGGGGTTCAGATTGGAGGACATCCTTGGCACTACATCTACACCCCCAACCACAAGAGACACAGAGGAACCCACCACGTCTGCTCCATCACAGATGGAGCTCTG
Seq C2 exon
GCAAAGAACGGCGTCCAGGACATGAAATGTGACTCTCTAGAAGTGGACTGGATCTTTTTTCACCCAGATGACTCCGGTCGAATCATTCATGCCGGGCCCAGCACAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGGAGCTGATTCTGGGA
R:
TTTATTGTGCTGGGCCCGG
Band lengths:
210-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]