GgaEX0014136 @ galGal3
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19469920-19475055:-
Coord C1 exon
chr7:19474950-19475055
Coord A exon
chr7:19471339-19471481
Coord C2 exon
chr7:19469920-19470029
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACATTACCCCATGTTTGCAGATA
3' ss Score
7.25
5' ss Seq
TTGGTAATA
5' ss Score
4.19
Exon sequences
Seq C1 exon
TTCATGGAGCGGCCATTTGACTTGGGAAGTGAACTCAATTGGAATGGTGAAGTGGGAGTTGTGGGAAAGTATCCATTTGGTCTTCCATGTAACATTAAAATAACAG
Seq A exon
ATACCCCACCTTTGCTATTTGAAGCATCTTCTCTGGAGAATGCATTTCAAATTGGAGGCTTTCCTTGGCATTATATCATCACACCTAACAAGAAAAAACATAGAGGAGTCTTCTATATTTGTTCTCTGAAAGACAATGCTTTG
Seq C2 exon
GCAAAAAATGGCATACAAGATATGAAATGCTGTTCGCTGGAACCTGATTGGATATATTTCCATCCAGATATGTCGGGCAGAATAATCCACGTGGGACCAAATTTGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'9-12,'9-11,11-12
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCGGCCATTTGACTTG
R:
TATCAAATTTGGTCCCACGTGGA
Band lengths:
210-353
Functional annotations
There are 0 annotated functions for this event