HsaEX0018619 @ hg19
Exon Skipping
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172314481-172330485:+
Coord C1 exon
chr2:172314481-172314585
Coord A exon
chr2:172325398-172325540
Coord C2 exon
chr2:172330376-172330485
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCCTGTCTCTACAGACA
3' ss Score
11.33
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATTTTTGGGAACGTTACAGATGCTACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCCAAACCATCGCTGAACAG
Seq A exon
ACATGCCACCACTGCTCTTTGAGGTGTCATCCCTGGAGAATGCTTTTCAGATTGGAGGCCATCCTTGGCACTACATCGTCACACCTAATAAGAAGAAACAGAAAGGAGTTTTCCATATTTGTGCCCTAAAAGACAATTCCCTG
Seq C2 exon
GCAAAAAATGGGATCCAAGAAATGGATTGTTGTTCTCTAGAATCTGACTGGATCTATTTCCATCCTGATGCTTCTGGTAGAATAATACATGTTGGTCCAAATCAAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827_MULTIEX1-3/7=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACGTTACAGATGCTACC
R:
TTGACTTGATTTGGACCAACATGT
Band lengths:
210-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)