GgaEX0014622 @ galGal3
Exon Skipping
Gene
ENSGALG00000009877 | KCNH1
Description
NA
Coordinates
chr3:23528890-23567097:+
Coord C1 exon
chr3:23528890-23529319
Coord A exon
chr3:23563156-23563355
Coord C2 exon
chr3:23566845-23567097
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTTTTTACAGCCC
3' ss Score
11.78
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGCATCAGTAGCCTCTTCAGTTCACTTAAAGTGGTCAGACTACTTCGTCTGGGTCGTGTTGCTCGGAAATTGGATCACTACATAGAATATGGAGCAGCAGTCTTGGTTCTGCTGGTGTGTGTGTTTGGTCTCGCAGCACACTGGTTGGCCTGCATTTGGTACAGCATAGGAGATTATGAAGTTATCGATGAGGATACAAACACAATCCGAACTGAGAGCTGGCTCTATCAGCTGGGAATGTCAATAGGAACACCTTACCGTTTTAACACGTCTGGCTTTGGAAAATGGGAAGGCGGACCAAGCAAGGATTCTGTCTACATCTCCTCACTGTATTTTACAATGACCAGCCTCACTAGTGTTGGATTTGGAAACATTGCACCGACTACAGACGGGGAGAAGATCTTTGCTGTTGCAATGATGATGATTGGCT
Seq A exon
CCCTTCTGTATGCAACCATTTTTGGTAACGTGACAACCATATTTCAGCAAATGTATGCTAATACGAACAGATATCATGAAATGCTGAACAGTGTCCGAGACTTTCTAAAGCTCTACCAGGTCCCTAAAGGACTCAGTGAACGTGTGATGGATTACATTGTCTCCACCTGGTCAATGTCCAGAGGAATAGATACTGAAAAG
Seq C2 exon
GTTTTGCAGATATGCCCTAAGGACATGAGAGCAGATATCTGTGTTCATCTGAACCGCAAAGTTTTCAAAGAGCACCCAGCCTTTAGGCTGGCAAGCGATGGGTGCCTTCGAGCACTTGCAATGGAATTTCAGACAGTGCACTGTGCCCCGGGAGACCTCATCTACCACGCTGGTGAGAGCGTCGACAGCCTTTGCTTTGTGGTTTCGGGGTCTTTGGAAGTAATCCAGGATGACGAGGTTGTTGCTATATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009877-'6-7,'6-6,8-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(65.0=100)
A:
PF0052026=Ion_trans=PD(4.5=14.9)
C2:
PF0002724=cNMP_binding=PU(45.5=47.1),PF078836=Cupin_2=PU(85.4=48.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCCTCACTAGTGTTGGA
R:
CCAAAGACCCCGAAACCACAA
Band lengths:
305-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]