RnoEX0046014 @ rn6
Exon Skipping
Gene
ENSRNOG00000003841 | Kcnh1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RGD Symbol;Acc:68398]
Coordinates
chr13:111068035-111144278:+
Coord C1 exon
chr13:111068035-111068464
Coord A exon
chr13:111138406-111138605
Coord C2 exon
chr13:111144026-111144278
Length
200 bp
Sequences
Splice sites
3' ss Seq
GTTCCTCTCTTTGTCTCCAGCCC
3' ss Score
9.8
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGCATCAGCAGCCTGTTCAGTTCTCTGAAAGTCGTGCGGCTGCTCCGTCTCGGACGAGTGGCCCGCAAGCTGGACCATTATATCGAGTACGGAGCGGCGGTACTGGTCCTGCTGGTGTGCGTGTTCGGGCTGGCTGCCCACTGGATGGCCTGCATCTGGTACAGCATTGGGGACTATGAGATCTTTGATGAAGACACCAAGACCATCCGTAACAACAGCTGGCTCTACCAACTGGCATTGGACATTGGCACTCCATACCAGTTTAATGGGTCTGGTTCGGGGAAGTGGGAAGGCGGGCCAAGCAAGAACTCCGTATACATTTCCTCGCTGTACTTCACCATGACAAGTCTCACCAGTGTGGGCTTTGGTAACATCGCCCCATCCACAGACATCGAGAAGATCTTCGCCGTAGCCATCATGATGATTGGCT
Seq A exon
CCCTTCTGTATGCCACCATCTTTGGGAATGTGACGACCATTTTCCAGCAGATGTATGCCAACACCAACAGGTATCATGAGATGCTCAACAGCGTCCGGGATTTCCTGAAGCTCTACCAGGTGCCCAAGGGGCTGAGCGAGCGGGTCATGGACTACATTGTGTCTACCTGGTCCATGTCCCGCGGCATCGACACGGAGAAG
Seq C2 exon
GTCCTGCAAATCTGCCCCAAGGACATGCGAGCTGACATTTGCGTACACCTGAACCGAAAAGTGTTCAAAGAACACCCCGCCTTCCGGCTGGCCAGCGATGGTTGCCTGAGGGCCTTGGCCATGGAGTTCCAGACAGTACACTGCGCCCCAGGGGACCTCATCTATCACGCCGGGGAGAGTGTGGACAGCCTCTGCTTCGTGGTCTCGGGCTCCCTGGAGGTGATCCAGGATGATGAGGTGGTGGCCATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003841-'15-20,'15-18,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(65.0=100)
A:
PF0052026=Ion_trans=PD(4.5=14.9)
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGGGTCTGGTTCGGGGAA
R:
GTCTGGAACTCCATGGCCAAG
Band lengths:
301-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]