GgaEX0015654 @ galGal4
Exon Skipping
Gene
ENSGALG00000010481 | CMPK1
Description
UMP-CMP kinase [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKE7]
Coordinates
chr8:20841392-20843259:+
Coord C1 exon
chr8:20841392-20841454
Coord A exon
chr8:20842093-20842261
Coord C2 exon
chr8:20843159-20843259
Length
169 bp
Sequences
Splice sites
3' ss Seq
GTTCTCTCCCCATTCTGCAGATG
3' ss Score
9.98
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTGCTGTACATTCTGGAGATCTGGGACAGAGCACATGACATGCAGGAGGCTTGCTTTGCTAAG
Seq A exon
ATGAGCTCCTGCAACCTCCCACAGTAAGGGAGCTTCTGATGTCACCTGAAGCTGGTGCATAGCTTGTTGGGTGTGGTGCAGTATCTGACAAGGTAGTTCAGATGGCATCTGAATGCAGGTGCTTGAGATAAGCACCATGAAGTGCTGGAAGGTCATATCTTTTGTGATG
Seq C2 exon
AATGCAGGCTTCCTCTCTAGGCATTGAATTTTGGCCTTTCTCAACCGTCTCATTGAGCTCAGCATTCCTGCAGCACTGGGGTGTTCTGTTTGCCCCCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010481-'3-3,'3-2,4-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(29.6=38.1),PF0040617=ADK=PU(5.8=42.9)
A:
PF0040617=ADK=PD(20.8=55.6)
C2:
NA
Main Inclusion Isoform:
ENSGALT00000017068fB1815
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACATTCTGGAGATCTGGG
R:
AAGAGGGGGCAAACAGAACAC
Band lengths:
162-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]