MmuEX6095168 @ mm9
Exon Skipping
Gene
ENSMUSG00000028719 | Cmpk1
Description
cytidine monophosphate (UMP-CMP) kinase 1 [Source:MGI Symbol;Acc:MGI:1913838]
Coordinates
chr4:114641823-114643963:-
Coord C1 exon
chr4:114643897-114643963
Coord A exon
chr4:114643069-114643107
Coord C2 exon
chr4:114641823-114641969
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCCTCAAATTCAGAGT
3' ss Score
6.99
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
AGTGATATATTCCCATTCTAAGACACCAGAAATCTTGCCAGTTTGAGTTCTCTGATGTCAGGAAATG
Seq A exon
AGTTCTGCCCCAGCCTCTTGATACATACTACCACACTGG
Seq C2 exon
AAATACGGCTACACACACCTTTCTGCAGGAGAGCTTCTTCGTGATGAAAGGAAGAATCCAGACTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGTTTATTAAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028719-'2-3,'2-2,3-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(21.7=62.5)
A:
PF0040617=ADK=PD(17.4=57.1)
C2:
PF0040617=ADK=FE(29.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACCAGAAATCTTGCCAGT
R:
AGTTCACCATACTGTGAGTCTGGA
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: