MmuEX6095168 @ mm10
Exon Skipping
Gene
ENSMUSG00000028719 | Cmpk1
Description
cytidine monophosphate (UMP-CMP) kinase 1 [Source:MGI Symbol;Acc:MGI:1913838]
Coordinates
chr4:114969218-114987149:-
Coord C1 exon
chr4:114986966-114987149
Coord A exon
chr4:114970464-114970502
Coord C2 exon
chr4:114969218-114969364
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCCTCAAATTCAGAGT
3' ss Score
6.99
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTCAGAAGCGCGTTGTATGCTGAGCAGCTGTCGTCGGCTGCTCCCGCACGTCCTGGTCCCGAGCTGCCCGCCGCTGACCCGCACACTGCGGCTCTTCCCTCTCCACCTCATGAAGCCGTTGGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAG
Seq A exon
AGTTCTGCCCCAGCCTCTTGATACATACTACCACACTGG
Seq C2 exon
AAATACGGCTACACACACCTTTCTGCAGGAGAGCTTCTTCGTGATGAAAGGAAGAATCCAGACTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGTTTATTAAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028719-'1-9,'1-8,6-9=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(10.4=30.4)
A:
PF0040617=ADK=PD(17.4=57.1)
C2:
PF0040617=ADK=FE(29.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCAGTGATCAAGCAGGC
R:
AGTTCACCATACTGTGAGTCTGGA
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types