GgaEX0016391 @ galGal4
Exon Skipping
Gene
ENSGALG00000010943 | SCN1A
Description
sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr7:19140426-19146553:+
Coord C1 exon
chr7:19140426-19140707
Coord A exon
chr7:19142966-19143021
Coord C2 exon
chr7:19146500-19146553
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTCCCCTCTAACAGTCT
3' ss Score
9.19
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
GTGGTTGTGAATGCCCTTTTAGGAGCAATTCCATCCATCATGAACGTGCTTCTCGTTTGTCTTATATTCTGGCTAATTTTCAGCATCATGGGAGTAAATCTGTTTGCTGGGAAGTTCTACTACTGTGTTAACACCACAACTGATGAAAGGTTTGAAGTCGACCAAATCAACAATTTTAGTCAGTGCGAGGAACTCATAAAAAACAATCAAAGTGCCCGATGGAAAAACGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTA
Seq A exon
TCTCAAGTACAGACTTGTTTAGGTTGTGGTGGACCCAAGAAAACAACCTCATAGAG
Seq C2 exon
GCTACATTTAAAGGCTGGATGGATATTATGTATGCAGCTATTGACTCAAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF065128=Na_trans_assoc=PD(7.8=83.3)
C2:
NA
Main Inclusion Isoform:
ENSGALT00000017814fB1912
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCAAAGTGCCCGATGGA
R:
GTCTCTTGAGTCAATAGCTGCA
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]