GgaEX0016390 @ galGal4
Exon Skipping
Gene
ENSGALG00000010943 | SCN1A
Description
sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr7:19128511-19146553:+
Coord C1 exon
chr7:19128511-19128633
Coord A exon
chr7:19140426-19140707
Coord C2 exon
chr7:19146500-19146553
Length
282 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTATTTGTGTATTAGGTG
3' ss Score
8.76
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GTCTCTTTGGTTAGCTTAACAGCAAATGCATTGGGTTACTCTGAACTTGGTGCCATTAAGTCCCTTAGGACACTAAGAGCTTTGAGACCTCTAAGAGCCTTGTCACGATTTGAAGGCATGAGG
Seq A exon
GTGGTTGTGAATGCCCTTTTAGGAGCAATTCCATCCATCATGAACGTGCTTCTCGTTTGTCTTATATTCTGGCTAATTTTCAGCATCATGGGAGTAAATCTGTTTGCTGGGAAGTTCTACTACTGTGTTAACACCACAACTGATGAAAGGTTTGAAGTCGACCAAATCAACAATTTTAGTCAGTGCGAGGAACTCATAAAAAACAATCAAAGTGCCCGATGGAAAAACGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTA
Seq C2 exon
GCTACATTTAAAGGCTGGATGGATATTATGTATGCAGCTATTGACTCAAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'25-33,'25-29,31-33
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAACAGCAAATGCATTGGGT
R:
GTCTCTTGAGTCAATAGCTGCA
Band lengths:
164-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]