DreEX6038645 @ danRer10
Exon Skipping
Gene
ENSDARG00000086819 | scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:ZFIN;Acc:ZDB-GENE-040426-751]
Coordinates
chr9:50218054-50224437:-
Coord C1 exon
chr9:50224315-50224437
Coord A exon
chr9:50220552-50220824
Coord C2 exon
chr9:50218054-50218107
Length
273 bp
Sequences
Splice sites
3' ss Seq
TGATGTTCATATGCCCACAGGTG
3' ss Score
9.28
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTCTCGCTGATCAGCCTGGTGGCCAACGCCCTCAACTATTCAGAGCTGAGTGCCATCAAATCCCTGCGAACACTCAGAGCCTTCCGGCCGCTTCGGGCTCTCTCACGCTTTGATGGAATGAGG
Seq A exon
GTGGTTGTGAACGCTCTTCTGGGCGCCATTCCCTCCATCATGAACGTCCTGCTCGTCTGCCTCATCTTCTGGCTCATTTTCAGCATTGTGGGTGTCAACTTCTTCGCTGGGAAGTTTTCTGAATGTATAAACATAACCACGGAGCAGCGCCTGCCTGTCTCAGAGGTCTATAACAAGACAGACTGTGAAAGAATGGGGAAAGGAGTCCGCTGGAGAAATGTGATCATTAACTTTGACAATGTTGGGAATGGATACCTGGCCCTGCTGCAAGTG
Seq C2 exon
GCAACATTTAAAGGGTGGATGCCTATTATGTATGCAGCGGTAGACTCTCGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086819-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.1=100)
A:
PF0052026=Ion_trans=FE(40.3=100)
C2:
PF0052026=Ion_trans=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACGCCCTCAACTATTCA
R:
ATTGCGAGAGTCTACCGCTGC
Band lengths:
156-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]