GgaEX0016390 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21104908-21123312:+
Coord C1 exon
chr7:21104908-21105030
Coord A exon
chr7:21117185-21117466
Coord C2 exon
chr7:21123259-21123312
Length
282 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTATTTGTGTATTAGGTG
3' ss Score
8.76
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GTCTCTTTGGTTAGCTTAACAGCAAATGCATTGGGTTACTCTGAACTTGGTGCCATTAAGTCCCTTAGGACACTAAGAGCTTTGAGACCTCTAAGAGCCTTGTCACGATTTGAAGGCATGAGG
Seq A exon
GTGGTTGTGAATGCCCTTTTAGGAGCAATTCCATCCATCATGAACGTGCTTCTCGTTTGTCTTATATTCTGGCTAATTTTCAGCATCATGGGAGTAAATCTGTTTGCTGGGAAGTTCTACTACTGTGTTAACACCACAACTGATGAAAGGTTTGAAGTCGACCAAATCAACAATTTTAGTCAGTGCGAGGAACTCATAAAAAACAATCAAAGTGCCCGATGGAAAAACGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTA
Seq C2 exon
GCTACATTTAAAGGCTGGATGGATATTATGTATGCAGCTATTGACTCAAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'22-27,'22-24,24-27
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=FE(40.6=100)
C2:
PF0052026=Ion_trans=FE(7.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAACAGCAAATGCATTGGGT
R:
GTCTCTTGAGTCAATAGCTGCA
Band lengths:
164-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]