GgaEX0016410 @ galGal3
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21136328-21137789:+
Coord C1 exon
chr7:21136328-21136428
Coord A exon
chr7:21137196-21137270
Coord C2 exon
chr7:21137691-21137789
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTAGACTATTGCAGAAA
3' ss Score
2.32
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATAATTGCAAACTTTCCAAACTTCATTCCTGCTTTCATAAAGAAAATGAAGCTGCAACTAGCCTTGCAGGACTGGGAGCAGGCAGTTGAAACTGCACATAG
Seq A exon
AAAGATGCTCTCAATTTAGAGGCCACAAGAATGGAGGCCCTGCATTTTCTGTGCAGAGAAGGAAAGATGCGTGAG
Seq C2 exon
GCTTCGGCAAGACTAAGTGACCTCATTAAAGCATTGGACAGGTTGGAGCCGCGTAATTCACAGCTCTTCTATAAAATGGCTTTAGCTTTCAGTAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'6-9,'6-8,9-9
Average complexity
S
Mappability confidence:
90%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF145591=TPR_19=PD(19.7=52.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAACTTTCCAAACTTCATTCCT
R:
AGAAGAGCTGTGAATTACGCGG
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]