DreEX6038621 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50150371-50156263:-
Coord C1 exon
chr9:50156106-50156263
Coord A exon
chr9:50152946-50153030
Coord C2 exon
chr9:50150371-50150469
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCATCATGTCAAAACTTCAGGCT
3' ss Score
3.95
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTCATTATTATGAATATCGCCAGAATTATTCTGGTGCTTTAGACACCATTAACCAGGTGATTGTGAGTTACCCGTCCTTTCTACCGGCTCTGGTGAAGAAGATGAAGCTGCTGTTGACTCTGCAGGACTGGGAACAAACTGTGGATGCAGCTCAGAG
Seq A exon
GCTTCTCCAGCGGGAGAAAAATAACCTGGAGGCTCTGAGGATGCAGGCCCTGCACGCTCTCTGCCGGGATGGAGACATCGCTGAG
Seq C2 exon
TCTGTAAATCAGCTATCAAATCTGATAAGCAATCTGGACATTCAAGAACCGAGCAATCCGGAGCTCTTCTACAGGATGTCTTTGGCGTTCACTCGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGCTCTGGTGAAGAAGAT
R:
ACTCGAGTGAACGCCAAAGAC
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]