HsaEX6016380 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166788268-166797694:-
Coord C1 exon
chr2:166797537-166797694
Coord A exon
chr2:166789483-166789567
Coord C2 exon
chr2:166788268-166788366
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTAAATTGTTTTCCTGCAGGTT
3' ss Score
10.27
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCCCTGGAGACTGTGAACCAGATAATCGTGAATTTTCCGAGCTTCCTTCCTGCTTTTGTTAAGAAAATGAAATTACAACTAGCCTTGCAGGATTGGGACCAGACAGTTGAGACAGCACAAAG
Seq A exon
GTTGCTGCTCCAAGATAGCCAAAATGTGGAAGCACTGAGAATGCAGGCACTCTACTATGTGTGTAGAGAGGGGGATATAGAGAAG
Seq C2 exon
GCTTCCACCAAGCTGGAAAACTTGGGAAATACATTGGATGCCATGGAACCACAGAATGCTCAACTTTTCTATAACATTACACTCGCCTTCAGCAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'7-9,'7-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.0=45.3)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAGACTGTGAACCAGA
R:
CTGTGGTTCCATGGCATCCAA
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)