MmuEX6101723 @ mm10
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66237787-66242788:-
Coord C1 exon
chr2:66242631-66242788
Coord A exon
chr2:66239523-66239607
Coord C2 exon
chr2:66237787-66237885
Length
85 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTTTCCTGCATGCAGGCT
3' ss Score
7.57
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTCTGTGCCTTGAGATTCGACAGAATTATTCCGGAGCTCTGGAGACCGTGAGCCAGATAATTGTAAACTTTCCAAGCTTCCTTCCTGCCTTTGAGAAGAAAATGAAATTACAACTGGCTTTACAGGATTGGGATCAGACAGTGGAGACAGCACAAAG
Seq A exon
GCTGCTGCTTCAAGACAATCACAACGTGGAGGCGCTGAGGATGCTGGCTCTGTATTATCTGTGTAGGGAAGGGGACGTAGAGAAG
Seq C2 exon
GCTGCTACCAAGCTGGAAAATTTAGGAAATGCATTGGATGTCATGGAACCACAGAATGCTCAACTTTTTTATAAGATTACACTAGCCTTCAGCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'10-12,'10-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000102718fB18817
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCCTTCCTGCCTTTGAG
R:
CGTTCTGCTGAAGGCTAGTGT
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types