RnoEX6017149 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52338365-52343276:-
Coord C1 exon
chr3:52343119-52343276
Coord A exon
chr3:52340068-52340152
Coord C2 exon
chr3:52338365-52338464
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTGGCGTGTTTTCCTGCAGGTT
3' ss Score
12.05
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTACTGTGCCTTGAGATGCGACAGAATTATTCTGGAGCTCTGGAGACTGTGAGTCAGATAATTGTGAACTTCCCGAGCTTCCTTCCTGCTTTTGAGAAGAAAATGAAATTACAACTGGCTTTGCAGGATTGGGATCAGACGGTGGAGACGGCGCAAAG
Seq A exon
GTTGCTGCTTCAGGACGGCCACAATGTGGAGGCGCTGAGAATGCTGGCTTTATATTATCTGTGTAGGGAAGGGGACATAGAGAAG
Seq C2 exon
GCTGCTGCCAAGCTGGAAAATTTAGGAAATGCATTGGATGTCATGGAACCACAGAATGCTCAACTTTTTTATAAGATTACAATAGCCTTCAGCAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-'10-12,'10-10,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000007832fB15787
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCTGGAGACTGTGAGT
R:
TGGTTCCATGACATCCAATGCA
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]